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Link to Retrovirus Integration Database (RID)
Proviral Sequence Database (PSD)
Choose virus and subtype
Virus
HIV1
Subtype
---- All subtypes or select ----
B
C
Choose host and chromosomes
Host
Homo sapiens-hg19 - hg19
Mus Musculus-mm9 - mm9
Gallus gallus-galGal4 - galGal4
Chromosome
-- All chromosomes or select --
chr1
chr2
chr3
chr4
chr5
chr6
chr7
chr8
chr9
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr20
chr21
chr22
chrX
chrY
chr23
chr24
chr25
chr26
chr27
chr28
chr29
chr30
chr31
chr32
chr33
chrW
chrZ
chrLGE64
chrMT
Query options
Query by ART
On ART
Off ART
Query by current viral load
>=50
<50
Query by tissue
-- Select a tissue --
Blood
Cell line
Lymphnodes
Query by cell
-- Select a cell --
ACH-2
Central memory CD4 T cell
CD4 T cell
Effector memory CD4 T cell
HLA-DR- meory T cell
HLA-DR+ meory T cell
Lymphnode mononuclear cell
Naive CD4 T cell
PBMC
Resting CD4 T cell
Transitional memory CD4 T cell
Query by reference paper - PMID
Query by genbank IDs (comma separated, up to 2)
Query by sequence annotation
-- Select one or more by --
Infectious
Intact
Defective
Coding region defective
Other defective
Sequence completeness - complete
Sequence completeness - LTR missing
Sequence completeness - incomplete
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Advanced Biomedical Computational Science (ABCS)
at Leidos/FNLCR.