NCI PSD Tools

    Proviral Sequence Annotation & Intactness Test (ProSeq-IT)

    • ProSeq-IT is a standalone tool designed for users to obtain provirus sequence annotation and computationally inferred sequence intactness without going through PSD.
    • To use ProSeq-IT, users need to
      • Select a subtype (only B, and C currently)
      • Upload sequences in fasta format
      • Click submit
    • If your file contains HXB2 (for subtype B reference) or MJ4 (for subtype C reference), please rename HXB2 or MJ4 to a different name before submitting your file.
    • Sequences to be submitted cannot have ambiguous nucleotides like Y, R, N, etc.
    • File name and sequence ID cannot have space in them.



© PSD. Supported by Advanced Biomedical Computational Science (ABCS) at Leidos/FNLCR.